TR fMRIDC.AIR::align_warp( none model, none options="-q", input reg_hdr, input reg_img, input sub_hdr, input sub_img, output warp )

{

  argument = ${reg_img};

  argument = ${sub_img};

  argument = ${warp};

  argument = "-m "${model};

  argument = ${options};

}

TR fMRIDC.AIR::reslice( none options, none sliced, output sliced_hdr, output sliced_img, input warp )

{

  argument = ${warp};

  argument = ${sliced};

  argument = ${options};

}

TR fMRIDC.AIR::warp_n_slice( none align_options="-q", none model="12", input reg_hdr, input reg_img, none reslice_options, none sliced, output sliced_hdr, output sliced_img, input sub_hdr, input sub_img, inout warp )

{

  call fMRIDC.AIR::align_warp( model=${model}, options=${align_options}, reg_hdr=${reg_hdr}, reg_img=${reg_img}, sub_hdr=${sub_hdr}, sub_img=${sub_img}, warp=${output:warp} );

  call fMRIDC.AIR::reslice( options=${reslice_options}, sliced=${sliced}, sliced_hdr=${sliced_hdr}, sliced_img=${sliced_img}, warp=${input:warp} );

}

TR fMRIDC.AIR::softmean( none atlas, output atlas_hdr, output atlas_img, none overwrite="y", none scaling_suffix="null", input sliced_hdr[], input sliced_img[] )

{

  argument = ${atlas};

  argument = ${overwrite};

  argument = ${scaling_suffix};

  argument = ${sliced_img};

}

DV fMRIDC.AIR::i3472_3->fMRIDC.AIR::warp_n_slice(

  reg_hdr=@{input:"3472-3_anonymized.hdr"}, 

  reg_img=@{input:"3472-3_anonymized.img"}, 

  reslice_options="-o", 

  sliced="3472-3_anonymized.sliced", 

  sliced_hdr=@{output:"3472-3_anonymized.sliced.hdr"}, 

  sliced_img=@{output:"3472-3_anonymized.sliced.img"}, 

  sub_hdr=@{input:"3472-3_anonymized.hdr"}, 

  sub_img=@{input:"3472-3_anonymized.img"}, 

  warp=@{inout:"3472-3_anonymized.warp"}

);

DV fMRIDC.AIR::i3472_4->fMRIDC.AIR::warp_n_slice(

  reg_hdr=@{input:"3472-3_anonymized.hdr"}, 

  reg_img=@{input:"3472-3_anonymized.img"}, 

  reslice_options="-o", 

  sliced="3472-4_anonymized.sliced", 

  sliced_hdr=@{output:"3472-4_anonymized.sliced.hdr"}, 

  sliced_img=@{output:"3472-4_anonymized.sliced.img"}, 

  sub_hdr=@{input:"3472-4_anonymized.hdr"}, 

  sub_img=@{input:"3472-4_anonymized.img"}, 

  warp=@{inout:"3472-4_anonymized.warp"}

);

DV fMRIDC.AIR::i3472_5->fMRIDC.AIR::warp_n_slice(

  reg_hdr=@{input:"3472-3_anonymized.hdr"}, 

  reg_img=@{input:"3472-3_anonymized.img"}, 

  reslice_options="-o", 

  sliced="3472-5_anonymized.sliced", 

  sliced_hdr=@{output:"3472-5_anonymized.sliced.hdr"}, 

  sliced_img=@{output:"3472-5_anonymized.sliced.img"}, 

  sub_hdr=@{input:"3472-5_anonymized.hdr"}, 

  sub_img=@{input:"3472-5_anonymized.img"}, 

  warp=@{inout:"3472-5_anonymized.warp"}

);

DV fMRIDC.AIR::i3472_6->fMRIDC.AIR::warp_n_slice(

  reg_hdr=@{input:"3472-3_anonymized.hdr"}, 

  reg_img=@{input:"3472-3_anonymized.img"}, 

  reslice_options="-o", 

  sliced="3472-6_anonymized.sliced", 

  sliced_hdr=@{output:"3472-6_anonymized.sliced.hdr"}, 

  sliced_img=@{output:"3472-6_anonymized.sliced.img"}, 

  sub_hdr=@{input:"3472-6_anonymized.hdr"}, 

  sub_img=@{input:"3472-6_anonymized.img"}, 

  warp=@{inout:"3472-6_anonymized.warp"}

);

DV fMRIDC.AIR::a3472_3->fMRIDC.AIR::softmean(

  atlas="atlas", 

  atlas_hdr=@{output:"atlas.hdr"}, 

  atlas_img=@{output:"atlas.img"}, 

  sliced_hdr=[ @{input:"3472-3_anonymized.sliced.hdr"}, @{input:"3472-4_anonymized.sliced.hdr"}, @{input:"3472-5_anonymized.sliced.hdr"}, @{input:"3472-6_anonymized.sliced.hdr"} ], 

  sliced_img=[ @{input:"3472-3_anonymized.sliced.img"}, @{input:"3472-4_anonymized.sliced.img"}, @{input:"3472-5_anonymized.sliced.img"}, @{input:"3472-6_anonymized.sliced.img"} ]

);

TR fMRIDC.AIR::convert( input image, output jpg )

{

  argument = ${image};

  argument = ${jpg};

}

DV fMRIDC.AIR::j3472_3_x->fMRIDC.AIR::convert(

  image=@{input:"atlas_x.ppm"}, 

  jpg=@{output:"atlas_x.jpg"}

);

DV fMRIDC.AIR::j3472_3_y->fMRIDC.AIR::convert(

  image=@{input:"atlas_y.ppm"}, 

  jpg=@{output:"atlas_y.jpg"}

);

DV fMRIDC.AIR::j3472_3_z->fMRIDC.AIR::convert(

  image=@{input:"atlas_z.ppm"}, 

  jpg=@{output:"atlas_z.jpg"}

);

TR fMRIDC.FSL::slicer( none axis, input img, none offset="0.5", output ppm )

{

  argument = ${img};

  argument = "-"${axis};

  argument = ${offset};

  argument = ${ppm};

}

DV fMRIDC.FSL::s3472_3_x->fMRIDC.FSL::slicer(

  axis="x", 

  img=@{input:"atlas.img"}, 

  ppm=@{output:"atlas_x.ppm"}

);

DV fMRIDC.FSL::s3472_3_y->fMRIDC.FSL::slicer(

  axis="y", 

  img=@{input:"atlas.img"}, 

  ppm=@{output:"atlas_y.ppm"}

);

DV fMRIDC.FSL::s3472_3_z->fMRIDC.FSL::slicer(

  axis="z", 

  img=@{input:"atlas.img"}, 

  ppm=@{output:"atlas_z.ppm"}

);

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